


Ahn, H.; Lee, K. J.; Childs, W. R.; Rogers, J. A.; Nuzzo, R. G.; Shim, A., Micron and submicron patterning of polydimethylsiloxane resists on electronic materials by decal transfer lithography and reactive ion-beam etching: Application to the fabrication of high-mobility, thin-film transistors. Journal of Applied Physics 2006, 100, (8).
Ahn, J. H.; Kim, H. S.; Lee, K. J.; Jeon, S.; Kang, S. J.; Sun, Y. G.; Nuzzo, R. G.; Rogers, J. A., Heterogeneous three-dimensional electronics by use of printed semiconductor nanomaterials. Science 2006, 314, (5806), 1754-1757.
Ahn, J. H.; Kim, H. S.; Lee, K. J.; Zhu, Z. T.; Menard, E.; Nuzzo, R. G.; Rogers, J. A., High-speed mechanically flexible single-crystal silicon thin-film transistors on plastic substrates. IEEE Electron Device Letters 2006, 27, (6), 460-462.
Ahn, J. H.; Kim, H. S.; Menard, E.; Lee, K. J.; Zhu, Z. T.; Kim, D. H.; Nuzzo, R. G.; Rogers, J. A., Bendable integrated circuits on plastic substrates by use of printed ribbons of single-crystalline silicon. Applied Physics Letters 2007, 90, (21).
Aird, A.; Wrachtrup, J.; Schulten, K.; Tietz, C., Possible pathway for ubiquinone shuttling in Rhodospirillum rubrum revealed by molecular dynamics simulation. Biophysical Journal 2007, 92, (1), 23-33.
Akselrod, G. M.; Timp, W.; Mirsaidov, U.; Zhao, Q.; Li, C.; Timp, R.; Timp, K.; Matsudaira, P.; Timp, G., Laser-guided assembly of heterotypic three-dimensional living cell microarrays. Biophysical Journal 2006, 91, (9), 3465-3473.
Alami, M.; Dalal, K.; Lelj-Garolla, B.; Sligar, S. G.; Duong, F., Nanodiscs unravel the interaction between the SecYEG channel and its cytosolic partner SecA. The EMBO Journal 2007, 26, (8), 1995-2004.
Albrecht, P. M.; Barraza-Lopez, S.; Lyding, J. W., Scanning tunnelling spectroscopy and ab initio calculations of single-walled carbon nanotubes interfaced with highly doped hydrogen-passivated Si(100) substrates. Nanotechnology 2007, 18, (9).
Albrecht, P. M.; Lyding, J. W., Local stabilization of single-walled carbon nanotubes on Si(100)-2x1 : H via nanoscale hydrogen desorption with an ultrahigh vacuum scanning tunnelling microscope. Nanotechnology 2007, 18, (12).
Albrecht, P. M.; Lyding, J. W., Lateral manipulation of single-walted carbon nanotubes on H-passivated Si(100) surfaces with an ultrahigh-vacuum scanning tunneling microscope. Small 2007, 3, (1), 146-152.
Amaro, R. E.; Sethi, A.; Myers, R. S.; Davisson, V. J.; Luthey-Schulten, Z. A., A network of conserved interactions regulates the allosteric signal in a glutamine amidotransferase. Biochemistry 2007, 46, (8), 2156-2173.
Ambati M.; Fang, N.; Sun, C.; Zhang, X., Surface resonant states and superlensing in acoustic metamaterials. Physical Review B 2007, 75, 195447.
Arkhipov, A.; Freddolino, P. L.; Imada, K.; Namba, K.; Schulten, K., Coarse-grained molecular dynamics simulations of a rotating bacterial flagellum. Biophysical Journal 2006, 91, (12), 4589-4597.
Arkhipov, A.; Freddolino, P. L.; Schulten, K., Stability and dynamics of virus capsids described by coarse-grained modeling. Structure 2006, 14, (12), 1767-1777.
Arkhipov, A. S.; Freddolino, P. L.; Schulten, K., Stability and dynamics of virus capsids described by coarse-grained modeling. Biophysical Journal 2007, 540A-540A.
Austing, D. G.; Yu, G.; Melnikov, D. V.; Leburton, J. P.; Tarucha, S., Few-electron spin and charge configurations in circular and rectangular vertical quantum dot mesas in a magnetic field: Experiment and full three-dimensional self-consistent simulations. Physica E-Low-Dimensional Systems & Nanostructures 2006, 32, (1-2), 395-398.
Barr, S. A.; Luijten, E., Effective interactions in mixtures of silica microspheres and polystyrene nanoparticles. Langmuir 2006, 22, (17), 7152-7155.
Barry, R. A.; Wiltzius, P., Humidity-sensing inverse opal hydrogels. Langmuir 2006, 22, (3), 1369-1374.
Bayas, M. V.; Kearney, A.; Avramovic, A.; van der Merwe, P. A.; Leckband, D. E., Impact of salt bridges on the equilibrium binding and adhesion of human CD2 and CD58. Journal of Biological Chemistry 2007, 282, (8), 5589-5596.
Bayburt, T. H.; Leitz, A. J.,;Xie, G.; Oprian, D. D.; Sligar, S. G., Transducin activation by nanoscale lipid bilayers containing one and two rhodopsins. Journal of Biological Chemistry 2007, 282, 14875-14881.
Bayburt, T. H.; Grinkova, Y. V.; Sligar, S. G., Assembly of single bacteriorhodopsin trimers in bilayer nanodiscs. Archives of Biochemistry and Biophysics 2006, 450, (2), 215-222.
Berfield, T. A.; Ong, R. J.; Payne, D. A.; Sottos, N. R., Residual stress effects on piezoelectric response of sol-gel derived lead zirconate titanate thin films. Journal of Applied Physics 2007, 101, (2).
Berfield, T. A.; Patel, H. K.; Shimmin, R. G.; Braun, P. V.; Lambros, J.; Sottos, N. R., Fluorescent image correlation for nanoscale deformation measurements. Small 2006, 2, (5), 631-635.
Berfield, T. A.; Patel, J. K.; Shimmin, R. G.; Braun, P. V.; Lambros, J.; Sottos, N. R., Micro- and nanoscale deformation measurement of surface and internal planes via digital image correlation. Experimental Mechanics 2007, 47, (1), 51-62.
Bi, X. C.; East, J. R.; Ravaioli, U.; Haddad, G. I., Analysis and design of Si terahertz transit-time diodes. Solid-State Electronics 2006, 50, (5), 889-896.
Billot, L.; de la Chapelle, M. L.; Barchiesi, D.; Chang, S. H.; Gray, S. K.; Rogers, J. A.; Bouhelier, A.; Adam, P. M.; Bijeon, J. L.; Wiederrecht, G. P.; Bachelot, R.; Royer, P., Error signal artifact in apertureless scanning near-field optical microscopy (vol 89, pg 023105, 2006). Applied Physics Letters 2006, 89, (9).
Billot, L.; de la Chapelle, M. L.; Barchiesi, D.; Chang, S. H.; Gray, S. K.; Rogers, J. A.; Bouhelier, A.; Adam, P. M.; Bijeon, J. L.; Wiederrecht, G. P.; Bachelot, R.; Royer, P., Error signal artifact in apertureless scanning near-field optical microscopy. Applied Physics Letters 2006, 89, (2).
Boldog, T.; Grimme, S.; Li, M. S.; Sligar, S. G.; Hazelbauer, G. L., Nanodiscs separate chemoreceptor oligomeric states and reveal their signaling properties. Proceedings of the National Academy of Sciences of the United States of America 2006, 103, (31), 11509-11514.
Braun, P. V.; Rinne, S. A.; Garcia-Santamaria, F., Introducing defects in 3D photonic crystals: State of the art. Advanced Materials 2006, 18, (20), 2665-2678.
Briassouli, A.; Ahuja, N., Extraction and analysis of multiple periodic motions in video sequences. IEEE Transactions on Pattern Analysis and Machine Intelligence 2007, 29, (7), 1244-1261.
Brown, E. N.; White, S. R.; Sottos, N. R., Fatigue crack propagation in microcapsule-toughened epoxy. Journal of Materials Science 2006, 41, (19), 6266-6273.
Cacciuto, A.; Luijten, E., Confinement-driven translocation of a flexible polymer. Physical Review Letters 2006, 96, (23).
Cacciuto, A.; Luijten, E., Self-avoiding flexible polymers under spherical confinement. Nano Letters 2006, 6, (5), 901-905.
Cao, Q.; Xia, M. G.; Kocabas, C.; Shim, M.; Rogers, J. A.; Rotkin, S. V., Gate capacitance coupling of singled-walled carbon nanotube thin-film transistors. Applied Physics Letters 2007, 90, (2).
Cao, Q.; Xia, M. G.; Shim, M.; Rogers, J. A., Bilayer organic-inorganic gate dielectrics for high-performance, low-voltage, single-walled carbon nanotube thin-film transistors, complementary logic gates, and p-n diodes on plastic substrates. Advanced Functional Materials 2006, 16, (18), 2355-2362.
Cao, Q.; Zhu, Z. T.; Lemaitre, M. G.; Xia, M. G.; Shim, M.; Rogers, J. A., Transparent flexible organic thin-film transistors that use printed single-walled carbon nanotube electrodes. Applied Physics Letters 2006, 88, (11).
Carmichael, E. S.; Ballard, J. B.; Lyding, J. W.; Gruebele, M., Frequency-modulated, single-molecule absorption detected by scanning tunneling microscopy. Journal of Physical Chemistry C 2007, 111, (8), 3314-3321.
Chandrasekharan, R.; Prakash, S.; Shannon, M. A.; Masel, R. I., Change in radiative optical properties of Ta2O5 thin films due to high-temperature heat treatment. Journal of Heat Transfer-Transactions of the ASME 2007, 129, (1), 27-36.
Chandrasekharan, R.; Masel, R. I.; Shannon, M. A., Experimental technique using FTIR to estimate IR optical properties at variable temperatures: Application to PMDA-ODA polyimide thin films from 100°C to 380°C. Review of Scientific Instruments 2007, 78, 053105.
Chasiotis, I., Nanoscale measurements in mechanics. Experimental Mechanics 2007, 47, (1), 5-6.
Chasiotis, I.; Bateson, C.; Timpano, K.; McCarty, A. S.; Barker, N. S.; Stanec, J. R., Strain rate effects on the mechanical behavior of nanocrystalline Au films. Thin Solid Films 2007, 515, (6), 3183-3189.
Chasiotis, I.; Cho, S. W.; Jonnalagadda, K., Fracture toughness and subcritical crack growth in polycrystalline silicon. Journal of Applied Mechanics-Transactions of the ASME 2006, 73, (5), 714-722.
Chen, H. N.; Ilan, B.; Wu, Y. J.; Zhu, F. Q.; Schulten, K.; Voth, G. A., Charge delocalization in proton channels, I: The aquaporin channels and proton blockage. Biophysical Journal 2007, 92, (1), 46-60.
Chen, J. H.; Martinez, T. J., QTPIE: Charge transfer with polarization current equalization. A fluctuating charge model with correct asymptotics. Chemical Physics Letters 2007, 438, (4-6), 315-320.
Chen, Z.; Freddolino, P.; Arkhipov, A.; Schulten, K., Simulation of protein translocation in a growing flagellum. Biophysical Journal 2007, 643A-643A.
Chiesl, T. N.; Putz, K. W.; Babu, M.; Mathias, P.; Shaikh, K. A.; Goluch, E. D.; Liu, C.; Barron, A. E., Self-associating block copolymer networks for microchip electrophoresis provide enhanced DNA separation via "inchworm" chain dynamics. Analytical Chemistry 2006, 78, (13), 4409-4415.
Cho, H. M.; Weissman, H.; Wilson, S. R.; Moore, J. S., A Mo(VI) alkylidyne complex with polyhedral oligomeric silsesquioxane ligands: Homogeneous analogue of a silica-supported alkyne metathesis catalyst. Journal of the American Chemical Society 2006, 128, (46), 14742-14743.
Cho, S. W.; Chasiotis, I., Elastic properties and representative volume element of polycrystalline silicon for MEMS. Experimental Mechanics 2007, 47, (1), 37-49.
Cho, S. W.; Jonnalagadda, K.; Chasiotis, I., Mode I and mixed mode fracture of polysilicon for MEMS. Fatigue & Fracture of Engineering Materials & Structures 2007, 30, (1), 21-31.
Chougnet, A.; Grinkova, Y.; Ricard, D.; Sligar, S.; Woggon, W. –D., Fluorescent probes for raid screening of potential drug-drug interactions at the CYP3A4 level. ChemMedChem 2007, 2, (5), 717-724.
Chowdary, P. D.; Martinez, T. J.; Gruebele, M., The vibrationally adiabatic torsional potential energy surface of trans-stilbene. Chemical Physics Letters 2007, 440, (1-3), 7-11.
Chowdary, P. D.; Strickler, B.; Lee, S.; Gruebele, M., The (X)over-tilde <-(A)over-tilde SEP spectra of jet-cooled thiophosgene. Chemical Physics Letters 2007, 434, (4-6), 182-187.
Christian; Mitchell, M.; Kenis, P. J. A., Ceramic microreactors for on-site hydrogen production from high temperature steam reforming of propane. Lab on a Chip 2006, 6, (10), 1328-1337.
Christian; Mitchell, M.; Kim, D. P.; Kenis, P. J. A., Ceramic microreactors for on-site hydrogen production. Journal of Catalysis 2006, 241, (2), 235-242.
Chu, K. L.; Gold, S.; Subramanian, V.; Lu, C.; Shannon, M. A.; Masel, R. I., A nanoporous silicon membrane electrode assembly for on-chip micro fuel cell applications. Journal of Microelectromechanical Systems 2006, 15, (3), 671-677.
Chu, K. L.; Shannon, M. A.; Masel, R. I., An improved miniature direct formic acid fuel cell based on nanoporous silicon for portable power generation. Journal of the Electrochemical Society 2006, 153, (8), A1562-A1567.
Cohen, J.; Arkhipov, A.; Braun, R.; Schulten, K., Imaging the migration pathways for O-2, CO, NO, and Xe inside myoglobin. Biophysical Journal 2006, 91, (5), 1844-1857.
Cruz, E.; Aksimentiev, A.; Schulten, K., Computational studies of ionic conduction through silica nanopores. Biophysical Journal 2007, 651A-651A.
Cruz-Chu, E. R.; Aksimentiev, A.; Schulten, K., Water-silica force field for simulating nanodevices. Journal of Physical Chemistry B 2006, 110, (43), 21497-21508.
Dantuluri, V.; Maiti, S.; Geubelle, P. H.; Patel, R.; Kilic, H., Cohesive modeling of delamination in Z-pin reinforced composite laminates. Composites Science and Technology 2007, 67, (3-4), 616-631.
De, S. K.; Aluru, N. R., A hybrid full-Lagrangian technique for the static and dynamic analysis of magnetostatic MEMS. Journal of Micromechanics and Microengineering 2006, 16, (12), 2646-2658.
De, S. K.; Aluru, N. R., Theory of thermoelastic damping in electrostatically actuated microstructures. Physical Review B 2006, 74, (14).
De, S. K.; Aluru, N. R., U-sequence in electrostatic microelectromechanical systems (MEMS). Proceedings of the Royal Society a-Mathematical Physical and Engineering Sciences 2006, 462, (2075), 3435-3464.
De, S. K.; Aluru, N. R., Coupling of hierarchical fluid models with electrostatic and mechanical models for the dynamic analysis of MEMS. Journal of Micromechanics and Microengineering 2006, 16, (8), 1705-1719.
Denisov, I. G.; Baas, B. J.; Grinkova, Y. V.; Sligar, S. G., Cooperativity in cytochrome P450 3A4 - Linkages in substrate binding, spin state, uncoupling, and product formation. Journal of Biological Chemistry 2007, 282, (10), 7066-7076.
Denisov, I. G.; Grinkova, Y. V.; Baas, B. J.; Sligar, S. G., The ferrous-dioxygen intermediate in human cytochrome P450 3A4 - Substrate dependence of formation and decay kinetics. Journal of Biological Chemistry 2006, 281, (33), 23313-23318.
Denisov, I. G.; Victoria, D. C.; Sligar, S. G., Cryoradiolytic reduction of heme proteins: Maximizing dose-dependent yield. Radiation Physics and Chemistry 2007, 76, (4), 714-721.
Denos, S. M.; Gruebele, M. H., Fast binding kinetics of, alpha helical peptides with small unilamellar vesicles. Biophysical Journal 2007, 585A-585A.
de Sousa, J. S.; Freire, V. N.; Leburton, J. P., Hole vs. electron-based operation in nanocrystal non-volatile memories. Applied Physics Letters 2007, 90, 223504; also in the June 11, 2007 issue of Virtual Journal of Nanoscale Science & Technology.
Dittrich, M.; Schulten, K., PcrA helicase, a prototype ATP-driven molecular motor. Structure 2006, 14, (9), 1345-1353.
Dittrich, M.; Yu, J.; Schulten, K., PcrA helicase, a molecular motor studied from the electronic to the functional level. Atomistic Approaches in Modern Biology: from Quantum Chemistry to Molecular Simulations 2007, 268, 319-347.
Dong, R.; Jensen, T. W.; Engberg, K.; Nuzzo, R. G.; Leckband, D. E., Variably elastic hydrogel patterned via capillary action in microchannels. Langmuir 2007, 23, (3), 1483-1488.
Dumont, C.; Gruebele, M., Refolding of lambda-repressor mutants using a novel pressure jump instrument. Biophysical Journal 2007, 400A-400A.
Dumont, C.; Matsumura, Y.; Kim, S. J.; Li, J. S.; Kondrashkina, E.; Kihara, H.; Gruebele, M., Solvent-tuning the collapse and helix formation time scales of lambda(*)(6-85). Protein Science 2006, 15, (11), 2596-2604.
Dutta, S.; Perring, M.; Barrett, S.; Mitchell, M.; Kenis, P. J. A.; Bowden, N. B., Cross metathesis on olefin-terminated monolayers on Si(111) using the Grubbs' catalyst. Langmuir 2006, 22, (5), 2146-2155.
Eargle, J.; Luthey-Schulten, Z., Visualizing the dual space of biological molecules. Computational Biology and Chemistry 2006, 30, (3), 219-226.
Engel, J.; Chen, J.; Liu, C., Strain sensitivity enhancement of thin metal film strain gauges on polymer microscale structures. Applied Physics Letters 2006, 89, (22).
Engel, J.; Liu, C., Creation of a metallic micromachined chain mail fabric. Journal of Micromechanics and Microengineering 2007, 17, (3), 551-556.
Engel, J. M.; Chen, J.; Liu, C.; Bullen, D., Polyurethane rubber all-polymer artificial hair cell sensor. Journal of Microelectromechanical Systems 2006, 15, (4), 729-736.
Engel, M.; Gruebele, M., Shifted-update rotation wavepacket propagation with a laser pulse. Chemical Physics Letters 2007, 433, (4-6), 368-372.
Farver, O.; Hwang, H. J.; Lu, Y.; Pecht, I., Reorganization energy of the CuA center in purple azurin: Impact of the mixed valence to trapped valence state transition. Journal of Physical Chemistry 2007, 111 (special issue in honor of Norman Sutin), 6690-6694.
Flachsbart, B. R.; Wong, K.; Iannacone, J. M.; Abante, E. N.; Vlach, R. L.; Rauchfuss, P. A.; Bohn, P. W.; Sweedler, J. V.; Shannon, M. A., Design and fabrication of a multilayered polymer microfluidic chip with nanofluidic interconnects via adhesive contact printing. Lab on a Chip 2006, 6, (5), 667-674.
Freddolino, P. L.; Arkhipov, A.; Schulten, K., Coarse-grained molecular dynamics simulations of rotation-induced structural transitions in the bacterial flagellum. Biophysical Journal 2007, 142A-142A.
Freddolino, P. L.; Arkhipov, A. S.; Larson, S. B.; McPherson, A.; Schulten, K., Molecular dynamics simulations of the complete satellite tobacco mosaic virus. Structure 2006, 14, (3), 437-449.
Freddolino, P. L.; Dittrich, M.; Schulten, K., Dynamic switching mechanisms in LOV1 and LOV2 domains of plant phototropins. Biophysical Journal 2006, 91, (10), 3630-3639.
Freund, J. B., Leukocyte margination in a model microvessel. Physics of Fluids 2007, 19, (2).
Gao, M.; Schulten, K., Onset of anthrax toxin pore formation. Biophysical Journal 2006, 90, (9), 3267-3279.
Gao, M.; Sotomayor, M.; Villa, E.; Lee, E. H.; Schulten, K., Molecular mechanisms of cellular mechanics. Physical Chemistry Chemical Physics 2006, 8, (32), 3692-3706.
García-Santamaría, F.; Braun, P. V., Are artificial opals non-close-packed fcc structures? Applied Physics Letters 2007, 90, 241905, 1-3.
García-Santamaría, F.; Xu, M.; Lousse, V.; Fan, S.; Braun, P. V.; Lewis, J. A., A germanium inverse woodpile structure with a large photonic band gap, Advanced Materials 2007, 19, 1567-1570.
Garner, D. K.; Vaughan, M. D.; Hwang, H. J.; Savelieff, M. G.; Berry, S. M.; Honek, J. F.; Lu, Y., Reduction potential tuning of the blue copper center in Pseudomonas aeruginosa azurin by the axial methionine as probed by unnatural amino acids. Journal of the American Chemical Society 2006, 128, (49), 15608-15617.
Ge, Z. B.; Cahill, D. G.; Braun, P. V., Thermal conductance of hydrophilic and hydrophobic interfaces. Physical Review Letters 2006, 96, (18).
Goluch, E. D.; Nam, J. M.; Georganopoulou, D. G.; Chiesl, T. N.; Shaikh, K. A.; Ryu, K. S.; Barron, A. E.; Mirkin, C. A.; Liu, C., A bio-barcode assay for on-chip attomolar-sensitivity protein detection. Lab on a Chip 2006, 6, (10), 1293-1299.
Gomez, L.; Bachelot, R.; Bouhelier, A.; Wiederrecht, G. P.; Chang, S. H.; Gray, S. K.; Hua, F.; Jeon, S.; Rogers, J. A.; Castro, M. E.; Blaize, S.; Stefanon, I.; Lerondel, G.; Royer, P., Apertureless scanning near-field optical microscopy: a comparison between homodyne and heterodyne approaches. Journal of the Optical Society of America B-Optical Physics 2006, 23, (5), 823-833.
Gracheva, M. E.; Leburton, J. P., Electrolytic charge inversion at the liquid-solid interface in a nanopore in a doped semiconductor membrane. Nanotechnology 2007, 18, (14), 145704.
Gracheva, M.; Leburton, J. P., p-n semiconductor membrane for electrically tunable ion current rectification and filtering. Nano Letters 2007, 7, 1717-1722.
Guaqueta, C.; Sanders, L. K.; Wong, G. C. L.; Luijten, E., The effect of salt on self-assembled actin-lysozyme complexes. Biophysical Journal 2006, 90, (12), 4630-4638.
Gui, E. L.; Li, L. J.; Lee, P. S.; Lohani, A.; Mhaisalkar, S. G.; Cao, Q.; Kang, S. J.; Rogers, J. A.; Tansil, N. C.; Gao, Z. Q., Electrical detection of hybridization and threading intercalation of deoxyribonucleic acid using carbon nanotube network field-effect transistors. Applied Physics Letters 2006, 89, (23).
Gumbart, J. C.; Schulten, K., Opening of the lateral gate of the translocon SecY. Biophysical Journal 2007, 597A-597A.
Guo, B. Z.; Ravaioli, U.; Staedele, M., Full band Monte Carlo calculations of velocity-field characteristics of wurtzite ZnO. Computer Physics Communications 2006, 175, (7), 482-486.
Gupta, C.; Mensing, G. A.; Shannon, M. A.; Kenis, P. J. A., Double transfer printing of small volumes of liquids. Langmuir 2007, 23, (5), 2906-2914.
Hall, J. E.; Wiederrecht, G. P.; Gray, S. K.; Chang, S. H.; Jeon, S.; Rogers, J. A.; Bachelot, R.; Royer, P., Heterodyne apertureless near-field scanning optical microscopy on periodic gold nanowells. Optics Express 2007, 15, (7), 4098-4105.
Hammonds J. S.; Saied, F.; Shannon, M. A., Solving coupled 3-D paraxial wave and thermal diffusion equations with mixed-mode parallel computations. Parallel Computing 2007, 33, 43-53.
Hartley, C. S.; Elliott, E. L.; Moore, J. S., Covalent assembly of molecular ladders. Journal of the American Chemical Society 2007, 129, (15), 4512-4513.
He, G. W.; Bhamidi, V.; Wilson, S. R.; Tan, R. B. H.; Kenis, P. J. A.; Zukoski, C. F., Direct growth of gamma-glycine from neutral aqueous solutions by slow, evaporation-driven crystallization. Crystal Growth & Design 2006, 6, (8), 1746-1749.
Hemp, J.; Robinson, D. E.; Ganesan, K. B.; Martinez, T. J.; Kelleher, N. L.; Gennis, R. B., Evolutionary migration of a post-translationally modified active-site residue in the proton-pumping heme-copper oxygen reductases. Biochemistry 2006, 45, (51), 15405-15410.
Henin, J.; Schulten, K.; Chipot, C., Conformational equilibrium in alanine-rich peptides probed by reversible stretching simulations. Journal of Physical Chemistry B 2006, 110, (33), 16718-16723.
Hickenboth, C. R.; Moore, J. S.; White, S. R.; Sottos, N. R.; Baudry, J.; Wilson, S. R., Biasing reaction pathways with mechanical force. Nature 2007, 446, (7134), 423-427.
Hoffmann, M.; Wanko, M.; Strodel, P.; Konig, P. H.; Frauenheim, T.; Schulten, K.; Thiel, W.; Tajkhorshid, E.; Elstner, M., Color tuning in rhodopsins: The mechanism for the spectral shift between bacteriorhodopsin and sensory rhodopsin II. Journal of the American Chemical Society 2006, 128, (33), 10808-10818.
Hong, L.; Cacciuto, A.; Luijten, E.; Granick, S., Clusters of charged Janus spheres. Nano Letters 2006, 6, (11), 2510-2514.
Hossain, T. K.; MacLaren, S.; Engel, J. M.; Liu, C.; Adesida, I.; Okojie, R. S., The fabrication of suspended micromechanical structures from bulk 6H-SiC using an ICP-RIE system. Journal of Micromechanics and Microengineering 2006, 16, (4), 751-756.
Hsiao, P. Y.; Luijten, E., Salt-induced collapse and reexpansion of highly charged flexible polyelectrolytes. Physical Review Letters 2006, 97, (14).
Hsu, K. H.; Schultz, P. L.; Ferreira, P. M.; Fang, N. X., Electrochemical nanoimprinting with solid-state superionic stamps. Nano Letters 2007, 7, (2), 446-451.
Hua, F.; Gaur, A.; Sun, Y. G.; Word, M.; Jin, N.; Adesida, I.; Shim, M.; Shim, A.; Rogers, J. A., Processing dependent behavior of soft imprint lithography on the 1--10-nm scale. IEEE Transactions on Nanotechnology 2006, 5, (3), 301-308.
Hua, H.; Ahuja, N.; Gao, C. Y., Design analysis of a high-resolution panoramic camera using conventional imagers and a mirror pyramid. IEEE Transactions on Pattern Analysis and Machine Intelligence 2007, 29, (2), 356-361.
Inglis, H. M.; Geubelle, P. H.; Matous, K.; Tan, H.; Huang, Y., Cohesive modeling of dewetting in particulate composites: micromechanics vs. multiscale finite element analysis. Mechanics of Materials 2007, 39, (6), 580-595.
Isgro, T. A.; Schulten, K., Association of nuclear pore FG-repeat domains to NTF2 import and export complexes. Journal of Molecular Biology 2007, 366, (1), 330-345.
Isin, B.; Tajkhorshid, E.; Schulten, K.; Bahar, I., Conformational changes of rhodopsin explored by using normal modes in steered molecular dynamics simulations. Biophysical Journal 2007, 20A-20A.
Jager, M.; Zhang, Y.; Bieschke, J.; Nguyen, H.; Dendle, M.; Bowman, M. E.; Noel, J. P.; Gruebele, M.; Kelly, J. W., Structure-function-folding relationship in a WW domain. Proceedings of the National Academy of Sciences of the United States of America 2006, 103, (28), 10648-10653.
Jaiman, R. K.; Jiao, X.; Geubelle, P. H.; Loth, E., Conservative load transfer along curved fluid-solid interface with non-matching meshes. Journal of Computational Physics 2006, 218, (1), 372-397.
Jeon, S.; Nam, Y. S.; Shir, D. J. L.; Rogers, J. A., Three dimensional nanoporous density graded materials formed by optical exposures through conformable phase masks. Applied Physics Letters 2006, 89, (25).
Jiang, H. Q.; Sun, Y. G.; Rogers, J. A.; Huang, Y. G., Mechanics of precisely controlled thin film buckling on elastomeric substrate. Applied Physics Letters 2007, 90, (13).
Jones, A. S.; Rule, J. D.; Moore, J. S.; Sottos, N. R.; White, S. R., Life extension of self-healing polymers with rapidly growing fatigue cracks. Journal of the Royal Society Interface 2007, 4, (13), 395-403.
Joseph, S.; Aluru, N. R., Hierarchical multiscale simulation of electrokinetic transport in silica nanochannels at the point of zero charge. Langmuir 2006, 22, (21), 9041-9051.
Kandula, S. S. V.; Abanto-Bueno, J.; Lambros, J.; Geubelle, P. H., Cohesive modeling of quasi-static fracture in functionally graded materials. Journal of Applied Mechanics-Transactions of the ASME 2006, 73, (5), 783-791.
Kang, S. J.; Kocabas, C.; Ozel, T.; Shim, M.; Pimparkar, N.; Alam, M. A.; Rotkin, S. V.; Rogers, J. A., High-performance electronics using dense, perfectly aligned arrays of single-walled carbon nanotubes. Nature Nanotechnology 2007, 2, (4), 230-236.
Kastner, J.; Samimy, M.; Hileman, J.; Freund, J. B., Comparison of noise mechanisms in high and low Reynolds number high-speed jets. AIAA Journal 2006, 44, (10), 2251-2258.
Keller, M. W.; Sottos, N. R., Mechanical properties of microcapsules used in a self-healing polymer. Experimental Mechanics 2006, 46, (6), 725-733.
Kelley, R. F.; Rybtchinski, B.; Stone, M. T.; Moore, J. S.; Wasielewski, M. R., Solution-phase structure of an artificial foldamer: X-ray scattering study. Journal of the American Chemical Society 2007, 129, (14), 4114-4115.
Khalili-Araghi, F.; Tajkhorshid, E.; Schulten, K., Dynamics of K+ ion conduction through Kv1.2. Biophysical Journal 2006, 91, (6), L72-L74.
Khalili-Araghi, F.; Tajkhorshid, E.; Schulten, K., Dynamics of K+ ion conduction through Kv1.2. Biophysical Journal 2007, 616A-616A.
Khang, D. Y.; Jiang, H. Q.; Huang, Y.; Rogers, J. A., A stretchable form of single-crystal silicon for high-performance electronics on rubber substrates. Science 2006, 311, (5758), 208-212.
Kim, H.; Liu, J.; Li, J.; Nagraj, N.; Li, M.; Lu, Y., Metal-dependent global folding and activity of the 8-17 DNAzyme studied by fluorescence resonance energy transfer. Journal of the American Chemical Society 2007, 129, 6896-6902.
Kim, J.; Matagne, P.; Leburton, J. P.; Martin, R. M.; Hatano, T.; Tarucha, S., Engineering quantum confinement and orbital couplings in laterally coupled vertical quantum dots for spintronic applications. IEEE Transactions on Nanotechnology 2006, 5, (4), 343-349.
Kim, J.; Melnikov, D. V.; Leburton, J. P.; Austing, D. G.; Tarucha, S., Spin charging sequences in three colinear laterally coupled vertical quantum dots. Physical Review B 2006, 74, (3).
Kim, M. H.; Shen, L.; Tao, H. L.; Martinez, T. J.; Suits, A. G., Conformationally controlled chemistry: Excited-state dynamics dictate ground-state reaction. Science 2007, 315, (5818), 1561-1565.
Ko, H. C.; Baca, A. J.; Rogers, J. A., Bulk quantities of single-crystal silicon micro-/nanoribbons generated from bulk wafers. Nano Letters 2006, 6, (10), 2318-2324.
Kourkoulos, V. N.; Cangellaris, A. C., Accurate approximation of Green's functions in planar stratified media in terms of a finite sum of spherical and cylindrical waves. IEEE Transactions on Antennas and Propagation 2006, 54, (5), 1568-1576.
Kuroda, M. A.; Leburton, J. P., Joule heating induced negative differential resistance in freestanding metallic carbon nanotubes. Applied Physics Letters 2006, 89, (10).
Kwon, H. I.; Ravaioli, U., Simulation of electronic/ionic mixed conduction in solid ionic memory devices. Microelectronics Journal 2006, 37, (10), 1047-1051.
Lambeth, R. H.; Moore, J. S., Light-induced shape changes in azobenzene functionalized polymers prepared by ring-opening metathesis polymerization. Macromolecules 2007, 40, (6), 1838-1842.
Larsen, R. W.; Lu, Y., Photothermal studies of CO photodissociation from an engineered CcOMb conatining a Cu-B ligand binding site. Biophysical Journal 2007, 385A-385A.
Lau, R. W. H.; Wah, B. W.; Li, Q.; Liu, C. L., Distributed media technologies and applications. IEEE Transactions on Multimedia 2006, 8, (2), 193-195.
Lawlor, O. S.; Chakravorty, S.; Wilmarth, T. L.; Choudhury, N.; Dooley, I.; Zheng, G. B.; Kale, L. V., ParFUM: a parallel framework for unstructured meshes for scalable dynamic physics applications. Engineering with Computers 2006, 22, (3-4), 215-235.
Leckband, D.; Prakasam, A., Mechanism and dynamics of cadherin adhesion. Annual Review of Biomedical Engineering 2006, 8, 259-287.
Lee, E. H.; Hsin, J.; Mulhe-Goll, C.; Mayans, O.; Schulten, K., Tertiary and secondary elasticity of titin Z1Z2 tandem repeats. Biophysical Journal 2007, 521A-522A.
Lee, K. J.; Meitl, M. A.; Ahn, J. H.; Rogers, J. A.; Nuzzo, R. G.; Kumar, V.; Adesida, I., Bendable GaN high electron mobility transistors on plastic substrates. Journal of Applied Physics 2006, 100, (12).
Lee, S.; Engel, M.; Gruebele, M., The state space model of vibrational energy flow: An experimental test using SEP spectra of jet-cooled thiophosgene. Chemical Physics Letters 2006, 420, (1-3), 151-156.
Lee, Y. J.; Heitzman, C. E.; Frei, W. R.; Johnson, H. T.; Braun, P. V., Transformation of hydrogel-based inverse opal photonic sensors from FCC to L1(1) during swelling. Journal of Physical Chemistry B 2006, 110, (39), 19300-19306.
Leitner, D. M.; Havenith, M.; Gruebele, M., Biomolecule large-amplitude motion and solvation dynamics: modelling and probes from THz to X-rays. International Reviews in Physical Chemistry 2006, 25, (4), 553-582.
Leitz, A. J.; Bayburt, T. H.; Barnakov, A. N.; Springer, B. A.; Sligar, S. G., Functional reconstitution of beta(2)-adrenergic receptors utilizing self-assembling Nanodisc technology. Biotechniques 2006, 40, (5), 601-612.
Li, F.; Leckband, D., Dynamic strength of molecularly bonded surfaces. Journal of Chemical Physics 2006, 125, (19).
Li, G.; Aluru, N. R., A Lagrangian approach for quantum-mechanical electrostatic analysis of deformable silicon nanostructures. Engineering Analysis with Boundary Elements 2006, 30, (11), 925-939.
Li, S. F.; Shaikh, K. A.; Szegedi, S.; Goluch, E.; Liu, C., Micromachined inking chip for scanning probe nanolithography using local thermal vapor inking method. Applied Physics Letters 2006, 89, (17).
Li, Y.; Kijac, A. Z.; Sligar, S. G.; Rienstra, C. M., Structural analysis of nanoscale self-assembled discoidal lipid bilayers by solid-state NMR spectroscopy. Biophysical Journal 2006, 91, (10), 3819-3828.
Lin, R. S.; Liu, C. B.; Yang, M. H.; Ahuja, N.; Levinson, S., Learning nonlinear manifolds from time series. In Computer Vision - Eccv 2006, Pt 2, Proceedings, 2006; Vol. 3952, pp 245-256.
Liu, C.; Fei, L.; Yan, X. F.; Han, J.; Midkiff, S. P., Statistical debugging: A hypothesis testing-based approach. IEEE Transactions on Software Engineering 2006, 32, (10), 831-848.
Liu, C. Z.; Chen, J.; Liu, P. L.; Shang, J. K., Investigation on aging-induced softening of eutectic microstructure in SnBi/Cu interconnect by nanoindentation. Journal of Materials Science & Technology 2006, 22, (1), 130-134.
Liu, F.; Gruebele, M., Pushing protein folding to the limit: a new downhill folder lambda repressor Q33H. Biophysical Journal 2007, 400A-400A.
Liu, J. W.; Brown, A. K.; Meng, X. L.; Cropek, D. M.; Istok, J. D.; Watson, D. B.; Lu, Y., A catalytic beacon sensor for uranium with parts-per-trillion sensitivity and millionfold selectivity. Proceedings of the National Academy of Sciences of the United States of America 2007, 104, (7), 2056-2061.
Liu Y.; Fang, N.; Wu, D.; Sun, C.; Zhang, X., Symmetric and antisymmetric modes of electromagnetic resonators. Applied Physics A 2007, 87, (2), 171-174.
Liu, J.; Lu, Y., Non-base pairing DNA provides a new dimension for controlling aptamer-linked nanoparticles and sensors. Journal of the American Chemical Society 2007, 129, 8634-8643.
Liu, J. W.; Lee, J. H.; Lu, Y., Quantum dot encoding of aptamer-linked nanostructures for one-pot simultaneous detection of multiple analytes. Analytical Chemistry 2007, 79, (11), 4120-4125.
Liu, J. W.; Lu, Y., Design of asymmetric DNAzymes for dynamic control of nanoparticle aggregation states in response to chemical stimuli. Organic & Biomolecular Chemistry 2006, 4, (18), 3435-3441.
Liu, J. W.; Lu, Y., Smart nanomaterials responsive to multiple chemical stimuli with controllable cooperativity. Advanced Materials 2006, 18, (13), 1667-1671.
Liu, J. W.; Mazumdar, D.; Lu, Y., A simple and sensitive "dipstick" test in serum based on lateral flow separation of aptamer-linked nanostructures". Angewandte Chemie-International Edition 2006, 45, (47), 7955-7959.
Liu, J. W.; Wilding, N. B.; Luijten, E., Simulation of phase transitions in highly asymmetric fluid mixtures. Physical Review Letters 2006, 97, (11).
Liu, J.; Lu, Y., Preparation of aptamer-linked gold nanoparticle purple aggregates for colorimetric sensing of analytes. Nature Protocol 2006, 1, 246-252.
Liu Z.; Durant, S.; Lee, H.; Pikus, Y.; Fang, N.; Xiong, Y.; Sun, C.; Zhang, X., Far-Field Optical Superlens, Nano Letters 2007, 7, (2), 403-408.
Liu Y.; Fang, N.; Wu, D.; Sun, C.; Zhang, X., Symmetric and antisymmetric modes of electromagnetic resonators. Applied Physics A 2007, 87, (2), 171-174.
Liu Z.; Xi, D.; Pile, D.; Lou, Q.; Fang, N.; Zhang. X., Enhanced backward scattering by surface plasmons on silver film. Applied Physics A 2007, 87, (2), 157-160.
Lu, Y., Metalloprotein and metallo-DNA/RNAzyme design: Current approaches, success measures, and future challenges. Inorganic Chemistry 2006, 45, (25), 9930-9940.
Lu, Y., Biosynthethic inorganic chemistry. Angewandte Chemie-International Edition 2006, 45, (34), 5588-5601.
Lu, Y.; Liu, J. W., Functional DNA nanotechnology: emerging applications of DNAzymes and aptamers. Current Opinion in Biotechnology 2006, 17, (6), 580-588.
Lu, Y.; Liu, J., Nanomaterials Inspired by Biology: Dynamic assembly of error-free nanomaterials in response to multiple chemical stimuli. Accounts of Chemical Research 2007, 40, 315–323.
Luan, B.; Cherezov, V.; Liu, W.; Moore, J.; Derrick, J.; Caffrey, M.; Aksimentiev, A., Refining X-ray structures of the adhesin OpcA with molecular dynamics. Biophysical Journal 2007, 5A-5A.
Luijten, E., Fluid simulation with the geometric cluster Monte Carlo algorithm. Computing in Science & Engineering 2006, 8, (2), 20-29.
Luijten, E.; Caccuito, A., Translocation of polymers out of confined geometries. Computer Physics Communications 2007, 177, (1), 150–153.
Lukashevich, D.; Cangellaris, A. C.; Russer, P., Oblique-oblique projection in TLM-MOR for high-Q structures. IEEE Transactions on Microwave Theory and Techniques 2006, 54, (10), 3712-3720.
Mack, N. H.; Wackerly, J. W.; Malyarchuk, V.; Rogers, J. A.; Moore, J. S.; Nuzzo, R. G., Optical transduction of chemical forces. Nano Letters 2007, 7, (3), 733-737.
Mack, S.; Meitl, M. A.; Baca, A. J.; Zhu, Z. T.; Rogers, J. A., Mechanically flexible thin-film transistors that use ultrathin ribbons of silicon derived from bulk wafers. Applied Physics Letters 2006, 88, (21).
Maiti, S.; Shankar, C.; Geubelle, P. H.; Kieffer, J., Continuum and molecular-level modeling of fatigue crack retardation in self-healing polymers. Journal of Engineering Materials and Technology-Transactions of the Asme 2006, 128, (4), 595-602.
Mak, P. J.; Denisov, I. G.; Victoria, D.; Makris, T. M.; Deng, T.; Sligar, S. G.; Kincaid, J. R., Resonance raman detection of the hydroperoxo intermediate in the cytochrome P450 enzymatic cycle. Journal of the American Chemical Society 2007,129, 6382-6383.
Makris, T. M.; von Koenig, K.; Schlichting, I.; Sligar, S. G., The status of high-valent metal oxo complexes in the P450 cytochromes. Journal of Inorganic Biochemistry 2006, 100, (4), 507-518.
Malyarchuk, V.; Stewart, M. E.; Nuzzo, R. G.; Rogers, J. A., Spatially resolved biosensing with a molded plasmonic crystal. Applied Physics Letters 2007, 90, (20).
Maria, J.; Malyarchuk, V.; White, J.; Rogers, J. A., Experimental and computational studies of phase shift lithography with binary elastomeric masks. Journal of Vacuum Science & Technology B 2006, 24, (2), 828-835.
Mashl, R. J.; Jakobsson, E., Protonation states in potassium channels. Biophysical Journal 2007, 267A-267A.
Matous, K.; Geubelle, P. H., Finite element formulation for modeling particle debonding in reinforced elastomers subjected to finite deformations. Computer Methods in Applied Mechanics and Engineering 2006, 196, (1-3), 620-633.
Matous, K.; Inglis, H. M.; Gu, X.; Rypl, D.; Jackson, T. L.; Geubelle, P. H., Multiscale modeling of solid propellants: From particle packing to failure. Composites Science and Technology 2007, 67, (7-8), 1694-1708.
Mauldin, T. C.; Rule, J. D.; Sottos, N. R.; White, S. R.; Moore, J. S., Self-healing kinetics and the stereoisomers of dicyclopentadiene. Journal of the Royal Society Interface 2007, 4, (13), 389-393.
McCarty, A.; Chasiotis, I., Description of brittle failure of non-uniform MEMS geometries. Thin Solid Films 2007, 515, (6), 3267-3276.
Meitl, M. A.; Feng, X.; Dong, J. Y.; Menard, E.; Ferreira, P. M.; Huang, Y. G.; Rogers, J. A., Stress focusing for controlled fracture in microelectromechanical systems. Applied Physics Letters 2007, 90, (8).
Melnikov, D. V.; Leburton, J. P., Single-particle state mixing in two-electron double quantum dots. Physical Review B 2006, 73, (15).
Melnikov, D. V.; Leburton, J. P.; Taha, A.; Sobh, N., Coulomb localization and exchange modulation in two-electron coupled quantum dots. Physical Review B 2006, 74, (4).
Melnikov, D. V.; Zhang, L. A.; Leburton, J. P., Exchange coupling between two electrons in double quantum dot structures. Current Opinion in Solid State & Materials Science 2006, 10, (2), 114-119.
Menard, E.; Marchenko, A.; Podzorov, V.; Gershenson, M. E.; Fichou, D.; Rogers, J. A., Nanoscale surface morphology and rectifying behavior of a bulk single-crystal organic semiconductor. Advanced Materials 2006, 18, (12), 1552-1556.
Menard, E.; Meitl, M. A.; Sun, Y. G.; Park, J. U.; Shir, D. J. L.; Nam, Y. S.; Jeon, S.; Rogers, J. A., Micro- and nanopatterning techniques for organic electronic and optoelectronic systems. Chemical Reviews 2007, 107, (4), 1117-1160.
Meyer, G. R.; Gullingsrud, J.; Schulten, K.; Martinac, B., Molecular dynamics study of MscL interactions with a curved lipid bilayer. Biophysical Journal 2006, 91, (5), 1630-1637.
Mirsaidov, U.; Timp, W.; Timp, K.; Matsudaira, P.; Timp, G., Spatio-temporal analysis of cell-cell signaling in a living cell microarray. Biophysical Journal 2007, 253A-253A.
Moon, P.; Lee, Y.; Ahn, E.; Kim, J.; Yang, C.; Lee, G.; Yoon, E.; Leburton, J. P., Enhanced piezoelectric effects in three-dimensionally coupled self-assembled quantum dot structures. Electronic Materials Letters 2006, 2.
Mukherjee, S.; Aluru, N. R., Applications in micro- and nanoelectromechanical systems. Engineering Analysis with Boundary Elements 2006, 30, (11), 909-909.
Naddo, T.; Che, Y.; Zhang, W.; Balakrishnan , K.; Yang, X.; Yen, M.; Zhao, J.; Moore, J. S., Detection of explosives with a fluorescent nanobril film. Journal of the American Chemical Society 2007, 129, (22), 6978-6979.
Nath, A.; Atkins, W. M.; Sligar, S. G., Applications of phospholipid bilayer nanodiscs in the study of membranes and membrane proteins. Biochemistry 2007, 46, (8), 2059-2069.
Nawaz, M.; Leburton, J. P.; Jin, J., Hole scattering by confined optical phonons in silicon nanowires. Applied Physics Letters 2007, 90, 183505. Also in the May 14, 2007 issue of Virtual Journal of Nanoscale Science & Technology.
O'Brien, D. J.; Sottos, N. R.; White, S. R., Cure-dependent viscoelastic poisson's ratio of epoxy. Experimental Mechanics 2007, 47, (2), 237-249.
Pandit, S.; Chiu, S. W.; Jakobsson, E.; Grama, A.; Scott, H. L., Molecular dynamics simulation of a dioleylphosphatidylserine lipid bilayer. Biophysical Journal 2007, 548A-548A.
Pandit, S. A.; Chiu, S. W.; Grama, A.; Jakobsson, E.; Scott, H. L., Molecular dynamics simulations of mixtures of cholesterol with POPC, DOPC, and DPPC. Biophysical Journal 2007, 548A-548A.
Pandit, S. A.; Chiu, S. W.; Jakobsson, E.; Grama, A.; Scott, H. L., Cholesterol surrogates: A comparison of cholesterol and 16 : 0 ceramide in POPC Bilayers. Biophysical Journal 2007, 92, (3), 920-927.
Pandit, S. A.; Khelashvili, G.; Jakobsson, E.; Grama, A.; Scott, H. L., Lateral organization in lipid-cholesterol mixed bilayers. Biophysical Journal 2007, 92, (2), 440-447.
Pandya, S.; Yang, Y.; Jones, D. L.; Engel, J.; Liu, C., Multisensor processing algorithms for underwater dipole localization and tracking using MEMS artificial lateral-line sensors. Eurasip Journal on Applied Signal Processing 2006.
Pfister, T. D.; Mirarefi, A. Y.; Gengenbach, A. J.; Zhao, X.; Danstrom, C.; Conatser, N.; Gao, Y. G.; Robinson, H.; Zukoski, C. F.; Wang, A. H. J.; Lu, Y., Kinetic and crystallographic studies of a redesigned manganese-binding site in cytochrome c peroxidase. Journal of Biological Inorganic Chemistry 2007, 12, (1), 126-137.
Pogorelov, T. V.; Autenrieth, F.; Roberts, E.; Luthey-Schulten, Z. A., Cytochrome c(2) exit strategy: Dissociation studies and evolutionary implications. Journal of Physical Chemistry B 2007, 111, (3), 618-634.
Prakasam, A.; Chien, Y. H.; Maruthamuthu, V.; Leckband, D. E., Calcium site mutations in cadherin: Impact on adhesion and evidence of cooperativity. Biochemistry 2006, 45, (22), 6930-6939.
Prakasam, A. K.; Maruthamuthu, V.; Leckband, D. E., Similarities between heterophilic and homophilic cadherin adhesion. Proceedings of the National Academy of Sciences of the United States of America 2006, 103, (42), 15434-15439.
Prakash, S.; Armijo, A. D.; Masel, R. I.; Shannon, M. A., Flame dynamics and structure within sub-millimeter combustors. AIChE Journal 2007, 53(6), 1568-1577.
Prakash, S.; Long, T. M.; Selby, J. C.; Moore, J. S.; Shannon, M. A., "Click" modification of silica surfaces and glass microfluidic channels. Analytical Chemistry 2007, 79, (4), 1661-1667.
Prakash, S.; Yeom, J.; Jin, N.; Adesida, I.; Shannon, M. A., Characterization of ionic transport at the nanoscale. Journal of Nanoengineering and Nanosystems 2006, 220, (2), 45-52(8).
Prakash, S.; Armijo, A. D.; Masel, R. I.; Shannon, M. A., Flame Dynamics in Sub-millimeter Combustors. International Journal Alternative Propulsion 2007, 1(2/3), 325-338.
Pruzinsky, S. A.; Garcia-Santamaria, F.; Braun, P. V., Two-photon polymerization of embedded features within photonic crystals. Abstracts of Papers of the American Chemical Society 2006, 231.
Puklin-Faucher, E.; Gao, M.; Schulten, K.; Vogel, V., How the headpiece hinge angle is opened: new insights into the dynamics of integrin activation. Journal of Cell Biology 2006, 175, (2), 349-360.
Putnam, S. A.; Cahill, D. G.; Braun, P. V.; Ge, Z. B.; Shimmin, R. G., Thermal conductivity of nanoparticle suspensions. Journal of Applied Physics 2006, 99, (8).
Raghunathan, A. V.; Aluru, N. R., Effect of size-asymmetric electrolyte on single-file osmosis. Applied Physics Letters 2006, 89, (6).
Raghunathan, A. V.; Aluru, N. R., Molecular understanding of osmosis in semipermeable membranes. Physical Review Letters 2006, 97, (2).
Rau, C.; Crecea, V.; Peterson, K. M.; Jemian, P. R.; Richter, C.-P.; Neuhäusler, U.; Schneider, G.; Yu, X.; Braun, P. V.; Chiang, T. C.; Robinson, I. K., Imaging of micro- and nano-structures with hard X-rays. Micro and Nano Letters 2007, 2, 1-5.
Rinne, J. W.; Wiltzius, P., Design of holographic structures using genetic algorithms. Optics Express 2006, 14, (21), 9909-9916.
Roberts, E.; Eargle, J.; Wright, D.; Luthey-Schulten, Z., MultiSeq: unifying sequence and structure data for evolutionary analysis. Bmc Bioinformatics 2006, 7.
Robinson, D.; Hemp, J.; Kelleher, N. L.; Martinez, T. J.; Gennis, R. B., The evolutionary migration of a post-translationally modified active-site residue in the proton-pumping heme-copper oxygen reductases. Biophysical Journal 2007, 502A-502A.
Rogers, J. A., Tubes, ribbons and wires for flexible electronics. Abstracts of Papers of the American Chemical Society 2006, 231.
Rogers, J. A., Polymer imprint lithography at the molecular scale. Abstracts of Papers of the American Chemical Society 2006, 231.
Rozhok, S.; Fan, Z. F.; Nyamjav, D.; Liu, C.; Mirkin, C. A.; Holz, R. C., Attachment of motile bacterial cells to prealigned holed microarrays. Langmuir 2006, 22, (26), 11251-11254.
Rule, J. D.; Sottos, N. R.; White, S. R., Effect of microcapsule size on the performance of self-healing polymers. Polymer 2007, 48, 3520-3529.
Ruppalt, L. B.; Lyding, J. W., Charge transfer between semiconducting carbon nanotubes and their doped GaAs(110) and InAs(110) substrates detected by scanning tunnelling spectroscopy. Nanotechnology 2007, 18, (21).
Ruppalt, L. B.; Lyding, J. W., Metal-induced gap states at a carbon-nanotube intramolecular heterojunction observed by scanning tunneling microscopy. Small 2007, 3, (2), 280-284.
Salaita, K.; Wang, Y. H.; Fragala, J.; Vega, R. A.; Liu, C.; Mirkin, C. A., Massively parallel dip-pen nanolithography with 55000-pen two-dimensional arrays. Angewandte Chemie-International Edition 2006, 45, (43), 7220-7223.
Samanta, A.; Freund, J. B.; Wei, M.; Lele, S. K., Robustness of acoustic analogies for predicting mixing-layer noise. AIAA Journal 2006, 44, (11), 2780-2786.
Shaw, A. W.; Pureza, V. S.; Sligar, S. G.; Morrissey, J. H., The local phospholipid environment modulates the activation of blood clotting. Journal of Biological Chemistry 2007, 282, (9), 6556-6563.
Shih, A. Y.; Freddolino, P. L.; Arkhipov, A.; Schulten, K., Assembly of lipoprotein particles revealed by coarse-grained molecular dynamics simulations. Journal of Structural Biology 2007, 157, (3), 579-592.
Shih, A. Y.; Freddolino, P. L.; Arkhipov, A.; Schulten, K., Assembly of lipoproteins revealed by coarse-grained molecular dynamics simulations. Biophysical Journal 2007, 250A-250A.
Shih, A. Y.; Freddolino, P. L.; Sligar, S. G.; Schulten, K., Disassembly of nanodiscs: using coarse-grained MD simulations to interpret SAXS patterns. Biophysical Journal 2007, 330A-330A.
Shimmin, R. G.; DiMauro, A. J.; Braun, P. V., Slow vertical deposition of colloidal crystals: A Langmuir-Blodgett process? Langmuir 2006, 22, (15), 6507-6513.
Shimmin, R. G.; Vajtai, R.; Siegel, R. W.; Braun, P. V., Room-temperature assembly of germanium photonic crystals through colloidal crystal templating. Chemistry of Materials 2007, 19, (8), 2102-2107.
Sligar, S., Self-assembled nanometer scale lipid bilayers for the study of xenobiotic metabolism. Drug Metabolism Reviews 2006, 38, 23-24.
Smaldone, R. A.; Moore, J. S., Foldamers as reactive sieves: Reactivity as a probe of conformational flexibility. Journal of the American Chemical Society 2007, 129, (17), 5444-5450.
Solov'yov, I. A.; Chandler, D. E.; Schulten, K., Magnetic field effects in Arabidopsis thaliana cryptochrome-1. Biophysical Journal 2007, 92, (8), 2711-2726.
Sotomayor, M.; Schulten, K., Single-molecule experiments in vitro and in silico. Science 2007, 316, (5828), 1144-1148.
Sotomayor, M.; Schulten, K., Tertiary and secondary structure elasticity of repeat proteins. Biophysical Journal 2007, 524A-524A.
Sotomayor, M.; van der Straaten, T. A.; Ravaioli, U.; Schulten, K., Electrostatic properties of the mechanosensitive channel of small conductance MscS. Biophysical Journal 2006, 90, (10), 3496-3510.
Sotomayor, M.; Vasquez, V.; Perozo, E.; Schulten, K., Ion conduction through MscS as determined by electrophysiology and simulation. Biophysical Journal 2007, 114A-114A.
Sottos, N.; White, S.; Bond, I., Introduction: self-healing polymers and composites. Journal of the Royal Society Interface 2007, 4, (13), 347-348.
Spendelow, J. S.; Goodpaster, J. D.; Kenis, P. J. A.; Wieckowski, A., Methanol dehydrogenation and oxidation on Pt(111) in alkaline solutions. Langmuir 2006, 22, (25), 10457-10464.
Stanec, J. R.; Smith, C. H.; Chasiotis, I.; Barker, N. S., Realization of low-stress Au cantilever beams. Journal of Micromechanics and Microengineering 2007, 17, (2), N7-N10.
Stewart, M. E.; Mack, N. H.; Malyarchuk, V.; Soares, J.; Lee, T. W.; Gray, S. K.; Nuzzo, R. G.; Rogers, J. A., Quantitative multispectral biosensing and 1D imaging using quasi-3D plasmonic crystals. Proceedings of the National Academy of Sciences of the United States of America 2006, 103, (46), 17143-17148.
Stone, M. T.; Heemstra, J. M.; Moore, J. S., The chain-length dependence test. Accounts of Chemical Research 2006, 39, (1), 11-20.
Sun, Y. G.; Choi, W. M.; Jiang, H. Q.; Huang, Y. G. Y.; Rogers, J. A., Controlled buckling of semiconductor nanoribbons for stretchable electronics. Nature Nanotechnology 2006, 1, (3), 201-207.
Sun, Y. G.; Kim, H. S.; Menard, E.; Kim, S.; Adesida, I.; Rogers, J. A., Printed arrays of aligned GaAs wires for flexible transistors, diodes, and circuits on plastic substrates. Small 2006, 2, (11), 1330-1334.
Sun, Y. G.; Kumar, V.; Adesida, I.; Rogers, J. A., Buckled and wavy ribbons of GaAs for high-performance electronics on elastomeric substrates. Advanced Materials 2006, 18, (21), 2857-2862.
Sun, Y. G.; Menard, E.; Rogers, J. A.; Kim, H. S.; Kim, S.; Chen, G.; Adesida, I.; Dettmer, R.; Cortez, R.; Tewksbury, A., Gigahertz operation in flexible transistors on plastic substrates. Applied Physics Letters 2006, 88, (18).
Sun, Y. G.; Rogers, J. A., Structural forms of single crystal semiconductor nanoribbons for high-performance stretchable electronics. Journal of Materials Chemistry 2007, 17, (9), 832-840.
Takeda, S.; Wiltzius, P., Growth of highly ordered colloidal crystals using self-assembly at liquid-liquid interfaces. Chemistry of Materials 2006, 18, (24), 5643-5645.
Talreja, S.; Kenis, P. J. A.; Zukoski, C. F., A kinetic model to simulate protein crystal growth in an evaporation-based crystallization platform. Langmuir 2007, 23, (8), 4516-4522.
Tan, H.; Huang, Y.; Liu, C.; Geubelle, P. H., Effect of nonlinear interface debonding on the constitutive model of composite materials. International Journal for Multiscale Computational Engineering 2006, 4, (1), 147-167.
Tan, H.; Huang, Y.; Liu, C.; Ravichandran, G.; Inglis, H. M.; Geubelle, P. H., The uniaxial tension of particulate composite materials with nonlinear interface debonding. International Journal of Solids and Structures 2007, 44, (6), 1809-1822.
Tang, Z.; Aluru, N. R., Calculation of thermodynamic and mechanical properties of silicon nanostructures using the local phonon density of states. Physical Review B 2006, 74, (23).
Tang, Z.; Zhao, H.; Li, G.; Aluru, N. R., Finite-temperature quasicontinuum method for multiscale analysis of silicon nanostructures. Physical Review B 2006, 74, (6).
Tehranchi, F.; Leburton, J. P.; Thean, A., A double gate metal-oxide-semiconductor structure for modulation of the hyperfine interaction in phosphorous-doped Si device. Journal of Applied Physics 2006, 100, (12).
Therriault, D.; White, S. R.; Lewis, J. A., Rheological behavior of fugitive organic inks for direct-write assembly. Applied Rheology 2007, 17, (1), 26-33.
Toepke, M. W.; Brewer, S. H.; Vu, D. M.; Rector, K. D.; Morgan, J. E.; Gennis, R. B.; Kenis, P. J. A.; Dyer, R. B., Microfluidic flow-flash: Method for investigating protein dynamics. Analytical Chemistry 2007, 79, (1), 122-128.
Trabuco, L. G.; Falck, E.; Villa, E.; Schulten, K., Modeling and simulations of a bacterial ribosome. Biophysical Journal 2007, 571A-571A.
Truong, T. T.; Lin, R. S.; Jeon, S.; Lee, H. H.; Maria, J.; Gaur, A.; Hua, F.; Meinel, I.; Rogers, J. A., Soft lithography using acryloxy perfluoropolyether composite stamps. Langmuir 2007, 23, (5), 2898-2905.
Tseng, T. T.; McMahon, A. M.; Zahm, R. J.; Pacold, M. E.; Jakobsson, E., Calcium channel auxiliary subunits. Journal of Molecular Microbiology and Biotechnology 2006, 11, (6), 326-344.
Tu, H. L.; Hong, L.; Anthony, S. M.; Braun, P. V.; Granick, S., Brush-sheathed particles diffusing at brush-coated surfaces in the thermally responsive PNIPAAm system. Langmuir 2007, 23, (5), 2322-2325.
Varma, S.; Jakobsson, E., How does the C2 domain "calcium trigger" work? Insights from molecular dynamics simulations. Biophysical Journal 2007, 595A-595A.
Varma, S.; Jakobsson, E., The cPLA(2) C2 alpha domain in solution: Structure and dynamics of its Ca2+-activated and cation-free states. Biophysical Journal 2007, 92, (3), 966-976.
Vasquez, V.; Sotomayor, M.; Cortes, D. M.; Roux, B.; Schulten, K.; Perozo, E., Three dimensional architecture of MscS N-terminus and transmembrane segments in the closed state. Biophysical Journal 2007, 114A-114A.
Vidal, J.; Gracheva, M.; Leburton, J. P., Electrically tunable solid-state silicon nanopore ion filter. Nanoscale Research Letters 2006, 2, pp.61-68.
Villa, E.; Schulten, K., Multiscale simulations of the DNA loop topologies induced by the lac repressor. Biophysical Journal 2007, 185A-185A.
Wackerly, J. W.; Moore, J. S., Cooperative self-assembly of oligo(m-phenyleneethynylenes) into supramolecular coordination polymers. Macromolecules 2006, 39, (21), 7269-7276.
Wang, H. C.; Xu, N.; Raskar, R.; Ahuja, N., Videoshop: A new framework for spatio-temporal video editing in gradient domain. Graphical Models 2007, 69, (1), 57-70.
Wang, K.; Chang, A.; Kale, L. V.; Dantzig, J. A., Parallelization of a level set method for simulating dendritic growth. Journal of Parallel and Distributed Computing 2006, 66, (11), 1379-1386.
Wang, X. J.; Tu, H. L.; Braun, P. V.; Bohn, P. W., Length scale heterogeneity in lateral gradients of poly(N-isopropylacrylamide) polymer brushes prepared by surface-initiated atom transfer radical polymerization coupled with in-plane electrochemical potential gradients. Langmuir 2006, 22, (2), 817-823.
Wang, Y.; Cohen, J.; Boron, W.; Schulten, K.; Tajkhorshid, E., Aquaporin-mediated gas conduction across biological membranes. Biophysical Journal 2007, 264A-264A.
Wang, Y.; Cohen, J.; Boron, W. F.; Schulten, K.; Tajkhorshid, E., Exploring gas permeability of cellular membranes and membrane channels with molecular dynamics. Journal of Structural Biology 2007, 157, (3), 534-544.
Won, C. Y.; Aluru, N. R., Water permeation through a subnanometer boron nitride nanotube. Journal of the American Chemical Society 2007, 129, (10), 2748-2749.
Won, C. Y.; Joseph, S.; Aluru, N. R., Effect of quantum partial charges on the structure and dynamics of water in single-walled carbon nanotubes. Journal of Chemical Physics 2006, 125, (11).
Wu, W.; Yu, Z. N.; Wang, S. Y.; Williams, R. S.; Liu, Y. M.; Sun, C.; Zhang, X.; Kim, E.; Shen, Y. R.; Fang, N. X., Midinfrared metamaterials fabricated by nanoimprint lithography. Applied Physics Letters 2007, 90, (6), 063107.
Wu D. M.; Fang, N.; Sun, C.; Zhang, X., Stiction problems in releasing of 3D microstructures and its solution, Sensors and Actuators A 2006, 128:1, 109-115, 2006.
Wu, W.; Kim, E.; Ponizovskaya, E.; Liu, Y.; Yu, Z.; Fang, N.; Shen, Y.R.; Bratkovsky, A. M.; Tong, W.; Sun, C.; Zhang, X.; Wang, S.-Y.; Williams, R. S., Optical metamaterials at near and mid-IR range fabricated by nanoimprint lithography. Applied Physics A 2007, 87:2, 143-150.
Wu, Y.; Shannon, M. A., ac driving amplitude dependent systematic error in scanning Kelvin probe microscope measurements: Detection and correction. Review of Scientific Instruments 2006, 77, (4).
Wuang, S. C.; Neoh, K. G.; Kang, E. T.; Pack, D. W.; Leckband, D. E., Heparinized magnetic nanoparticles: In-vitro assessment for biomedical applications. Advanced Functional Materials 2006, 16, (13), 1723-1730.
Wuang, S. C.; Neoh, K. G.; Kang, E. T.; Pack, D. W.; Leckband, D. E., Polypyrrole nanospheres with magnetic and cell-targeting capabilities. Macromolecular Rapid Communications 2007, 28, (7), 816-821.
Xia, Y.; Kalihari, V.; Frisbie, C. D.; Oh, N. K.; Rogers, J. A., Tetracene air-gap single-crystal field-effect transistors. Applied Physics Letters 2007, 90, (16).
Yang, Y. C.; Chen, J.; Engel, J.; Pandya, S.; Chen, N. N.; Tucker, C.; Coombs, S.; Jones, D. L.; Liu, C., Distant touch hydrodynamic imaging with an artificial lateral line. Proceedings of the National Academy of Sciences of the United States of America 2006, 103, (50), 18891-18895.
Yeom, J.; Jayashree, R. S.; Rastogi, C.; Shannon, M. A.; Kenis, P. J. A., Passive direct formic acid microfabricated fuel cells. Journal of Power Sources 2006, 160, (2), 1058-1064.
Yi, S.; Ahuja, N., A novel omnidirectional stereo vision system with a single camera. In Image Analysis and Recognition, Pt 2, 2006; Vol. 4142, pp 146-156.
Yi, S.; Choi, B.; Ahuja, N., Real-time omni-directional distance measurement with active panoramic vision. International Journal of Control Automation and Systems 2007, 5, (2), 184-191.
Yin, Y.; Jensen, M.; Tajkhorshid, E.; Schulten, K., Sugar transport across lactose permease probed by molecular dynamics simulations. Biophysical Journal 2007, 64A-64A.
Yin, Y.; Jensen, M. O.; Tajkhorshid, E.; Schulten, K., Sugar binding and protein conformational changes in lactose permease. Biophysical Journal 2006, 91, (11), 3972-3985.
Yoon, S. K.; Fichtl, G. W.; Kenis, P. J. A., Active control of the depletion boundary layers in microfluidic electrochemical reactors. Lab on a Chip 2006, 6, (12), 1516-1524.
Yu, J.; Ha, T.; Schulten, K., Structure-based model of the stepping motor of PcrA helicase. Biophysical Journal 2006, 91, (6), 2097-2114.
Yu, X.; Lee, Y.-J.; Furstenberg, R.; White, J. O.; Braun, P. V., Filling fraction dependent properties of inverse opal metallic photonic crystals, Advanced Materials 2007, 19, 1689-1692.
Yu, J.; Yool, A. J.; Schulten, K.; Tajkhorshid, E., Mechanism of gating and ion conductivity of a possible tetrameric pore in aquaporin-1. Structure 2006, 14, (9), 1411-1423.
Yu, T. L.; Xu, N.; Ahuja, N., Shape and View Independent Reflectance Map from multiple views. International Journal of Computer Vision 2007, 73, (2), 123-138.
Yun, G.; Hwang, K. C.; Huang, Y.; Wu, P. D.; Liu, C., Size effect in tension of thin films on substrate: a study based on the reformulation of mechanism-based strain gradient plasticity. Philosophical Magazine 2006, 86, (33-35), 5553-5566.
Zhang, F.; Huang, Y.; Hwang, K. C.; Qu, S.; Liu, C., A three-dimensional strain gradient plasticity analysis of particle size effect in composite materials. Materials and Manufacturing Processes 2007, 22, (2), 140-148.
Zhang, L. X.; Melnikov, D. V.; Leburton, J. P., Exchange interaction and stability diagram of coupled quantum dots in magnetic fields. Physical Review B 2006, 74, (20).
Zhang, L. X.; Melnikov, D. V.; Leburton, J. P., Engineering exchange coupling in double elliptic quantum dots. IEEE Transactions on Nanotechnology 2007, 6, (2), 250-255.
Zhang, W.; Moore, J. S., Alkyne metathesis: Catalysts and synthetic applications. Advanced Synthesis & Catalysis 2007, 349, (1-2), 93-120.
Zhao, J.; Das, A.; Zhang, X. Y.; Schatz, G. C.; Sligar, S. G.; Van Duyne, R. P., Resonance surface plasmon spectroscopy: Low molecular weight substrate binding to cytochrome P450. Journal of the American Chemical Society 2006, 128, (34), 11004-11005.
Zhao, Q.; Dimitrov, V.; Dimauro, O.; Dorvel, B.; Sigalov, G.; Aksimentiev, A.; Sligar, S.; Timp, G., Force spectroscopy using an electric field in a synthetic nanopore. Biophysical Journal 2007, 162A-162A.
Zhao, Q.; Sigalov, G.; Dimitrov, V.; Dorvel, B.; Mirsaidov, U.; Sligar, S.; Aksimentiev, A.; Timp, G., Detecting SNPs using a synthetic nanopore. Nano Letters 2007, 6:1680-1685.
Zhao, X.; Yeung, N.; Russell, B. S.; Garner, D. K.; Lu, Y., Catalytic reduction of NO to N2O by a designed heme copper center in myoglobin: Implications for the role of metal ions. Journal of the American Chemical Society 2006, 128, (21), 6766-6767.
Zhu, X.; Yan, C.; Winnik, F. M.; Leckband, D., End-grafted low-molecular-weight PNIPAM does not collapse above the LCST. Langmuir 2007, 23, (1), 162-169.
Zhu, Y.; Kuo, A. Y.; Cangellaris, A. C., Finite element modeling and multigrid preconditioner using adaptive triangular meshes. IEEE Microwave and Wireless Components Letters 2006, 16, (6), 357-359.