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Selected Awards & Honors

Narayana Aluru
Willett Faculty Scholar, UIUC, 2002-2005

Paul Bohn
Bomem-Michelson Award – Coblentz Society, 2005
School of Chemical Sciences Teaching Award, University of Illinois, 2004
Spectroscopy Society of Pittsburgh Award, 2004

Stephen Boppart
NSF CAREER Award, 2004
College of Engineering Everitt Award for Teaching Excellence, 2005
Electrical and Computer Engineering Outstanding Alumni Award, 2005

Paul Braun
Willett Faculty Scholar Award, College of Engineering, UIUC, 2002-present
Xerox Award for Faculty Research, College of Engineering, UIUC, 2004
3M Nontenured Faculty Award, 3M, 2001, 2002, 2003, 2004
P. Scott Carney Accenture Outstanding Advisor Award 2003-04

Martin Gruebele
Baker Symposium Lecturer, Cornell University, 2004

Paul Kenis
3M Young Faculty Award, 3M, 2001-2005

Jean-Pierre Leburton
Gold Medal for Scientific Achievement, 75th Anniversary of the Alumnus Association “ Les Amis de L’Universite de Liege”, Belgium, 2004
Quantum Devices Award, ISCS, 2004

Yi Lu
Howard Hughes Medical Institute Professor Award, 2002 – 2006
University Scholar Award, UIUC, 2002 – 2005

Zaida Luthey-Schulten
Chair, Biophysics Subsection of the American Chemical Society, 2002-2005

Richard Martin
Elected to serve as Councillor for the Division of Computational Physics on the Council of the American Physical Society, 2004-2007

Todd Martínez
University Scholar, UIUC, 2004
Packard Fellow, Packard Foundation, 1999-2005

Jeffrey Moore
Campus Award for Excellence in Undergraduate Teaching, UIUC, 2004
LAS Dean’s Award for Excellence in Undergraduate Teaching, LAS UIUC, 2004
Professor of the Year Award, Alpha Epsilon Delta (AED) Pre-Health Honors Society, 2004
Honorary Lifetime Member Golden Key Honour Society, 2004

John Rogers
Selected as Runner-Up (one of three) for Small Times Magazine’s Small Tech Researcher of the Year Award
Selected for one of “10 Technologies that Will Change the World” by MIT’s Technology Review magazine, for microfluidic photonic systems

Stephen Sligar
Fellow, Jerome Karle Nobel Laureate World Innovation Foundation, 2002 -
NIH Merit Award, 1999-2009

Nancy Sottos
Hetényi Award, Society for Experimental Mechanics, 2004
Senior Technical Editor, Experimental Mechanics, 2003–

Kenneth Suslick
American Chemical Society Senior Cope Scholar Award

Kenneth Watkin
Campus Advisory Board – National Center for Supercomputing Applications (NCSA), Office of the Vice Chancellor for Research, University of Illinois at Urbana- Champaign, 1999 – present.
Research Investigator, Neutron Capture Facility, Fermi National Laboratory, Batavia, IL, 2002-2004

Scott White
Willett Faculty Scholar, College of Engineering, University of Illinois at Urbana-Champaign, 2002-2005
Donald Biggar Willett Professor of Engineering, University of Illinois at Urbana-Champaign, 2005- present

Selected Patents & Patent Applications

Paul Bohn, Xiao Li, Jonathan Sweedler, and Ilesanmi Adesida: “Metal-Assisted Chemical Etch to Produce Porous Group III-V Materials,” Issue date: July 13, 2004, Patent No. 6,762,134.

Stephen Bopart and Alex Wei: “Multi-Functional Plasmon-Resonant Contrast Agents for Optical Coherence Tomography,” File date: 2004.

Stephen Boppart, Daniel Marks, Kenneth Suslick, and Farah Jean-Jacques Toublan: “Optical Contrast Agent for Optically Modifying Incident Radiation,” Publication date: December 23, 2004, Application No. 20040258762/A1.

Larry Markoski, Jeffrey Moore, and Joseph Lyding: “Electrochemical Cells Comprising Laminar Flow Induced Dynamic Conducting Interfaces, Electronic Devices Comprising Such Cells, and Methods Employing Same,” Issue date: March 30, 2004, Patent No. 6,713,206.

Jeffrey Moore, Joseph Rule, Eric Brown, Nancy Sottos, and Scott White: “Wax Particles for Protection of Activators, and Multifunction Autonomically Healing Composite Materials,” File Date: 2004.

Paul Bohn, Xiao Li, and Jonathan Sweedler: “Metal-Assisted Chemical Etch Porous Silicon Formation Method.”

Paul Bohn, Jonathan Sweedler, T.-C. Kuo, and Mark Shannon: “Gateable Nanofluidic Interconnects for Three-Dimensional Microfluidic Architectures.”

Stephen Boppart, Chenyang Xu: “Chemical Dyes as Contrast Agents for Optical Coherence Tomography (OCT),” Disclose date: 2004.

Stephen Boppart and Amy Oldenburg: “Method for Optical Imaging of Externally-Modifiable Contrast Agents,” Disclose date: 2004.

Daniel Marks, and Stephen Boppart: “A Method for Measuring the Raman Spectrum Interferometrically, Distinguishing Coherence Anti-Stokes Raman Scattering from Nonresonant Four-Wave-Mixing Processes,” Disclose date: 2004.

Paul Braun, Soo Hyoun Cho, Scott White, Nancy Sottos, Magnus Andersson: “Self-Healing Polymers,” File date: 2005.

Eric Choban, Paul Kenis, and Theodore Tzedakis: “Electrochemical Microreactors,” File date 2004.

Yi Lu and Jing Li: “Nucleic Acid Enzyme Biosensors for Ions,” Issue date: March 16, 2004, Patent No.6,706,474.

Yi Lu and Juewen Liu: “Nucleic Acid Biosensors,” International patent file date: 2004.

Yi Lu and Juewen Liu: “Biosensors Based on Directed Assembly of Particles,” File date: 2004.

Joseph Lyding, Karl Hess, and Jinju Lee: “Deuterium Treatment of Semiconductor Device,” Issue date: December 21, 2004, Patent No. 6,833,306.

Joseph W. Lyding and Karl Hess: “Semiconductor Devices, and Methods for Same,” Issue date: May 3, 2005, Patent No. 6,888,204.

D.-Y. Khang, K. Lee, M. Meitl, E. Menard, R.G. Nuzzo, J.A. Rogers, Y. Sun: “Methods and Devices for Fabricating and Assembling Printable Semiconductor Elements,” File Date: 2004.

S. Jeon, J.-U. Park and J.A. Rogers: “Methods and Devices for Fabricating Three-Dimensional Nanoscale Structures,” File date: 2004.

E. Menard and J.A. Rogers: “Methods of High Resolution Printing Using a Composite Elastomeric Stamp,” File date 2004.

David A. Muller and Gregory L. Timp: “Silicon oxide based gate dielectric layer,” Issue date: February 17, 2004, Patent Number 6,693,051.

M. McDonald and K. Watkin: “Paramagnetic Polymerized Protein Microspheres and Methods of Preparation Thereof,” Issue date: May 12, 2004.

Selected Grants Awarded

Paul Bohn, Mark Shannon, Jonathan Sweedler, and Brenda Wilson: National Institute of Allergies and Infectious Diseases – Regional Centers of Excellence, “Nanofluidic Devices for Recognition of Neurotoxins.”

Stephen Boppart, Martin Gruebele, Dana Dlott, etc.: NASA-NCI, “Nonlinear Optical Coherence Tomography for Biomolecular Detection.”

Stephen Boppart, William Greenough, Bruce Wheeler, Martha Gillette, and Charles Cox: NSF, “CAREER: Functional Optical Coherence Tomography for Neural Imaging.”

Paul Braun, Jennifer Lewis, Yi Lu, Pierre Wiltzius, Jeff Brinker (UNM), and Shanhui Fan (Stanford): ARO-MURI, “Self-Assembly of 3-D Multifunctional Ceramic Composites for Photonics and Sensors.”

Mark Lundstrom, Karl Hess, Umberto Ravaioli, Narayana Aluru, and several others: NSF, “Network for Computational Nanotechnology (NCN).”

Alexei Bezryadin, Jean-Pierre Leburton, Klaus Schulten, and Gregory Timp: NSF-NIRT, “A Nanometer Scale Gene-Chip.”

Jean-Pierre Leburton, Narayana Aluru, Gregory Timp, and Klaus Schulten: DARPA, “Single Molecule Detection Using A Silicon Nanotransistor Integrated Circuit.”

John Rogers, Joseph Lyding, Karl Hess, Slava Rotkin, Moonsub Shim, Michael Strano, Ilesanmi Adesida, and Graciela Blanchet: NSF, Nanoscale Interdisciplinary Research Teams Grant, “Printed Semiconducting Carbon Nanotube Arrays for High Performance Flexible Plastic Electronic Systems.”

Klaus Schulten, Laxmikant Kale, Robert Skeel, and Zaida Luthey-Schulten: NIH, “Resource for Macromolecular Modeling and Bioinformatics.”

Nancy Sottos, Scott White, and Jeffrey Moore: NASA/JPL, “Structural Health Systems for Crew Habitats.”

Gregory Timp, Paul Braun, Andreas Cangellaris, Gerard Wong, NSF-NIRT, “Laser-Guided Assembly of Nanosystems.”

Scott White, Nancy Sottos, and Philippe Geubelle, AFOSR “Multiscale modeling of fatigue response of self-healing structural composite.”

Umberto Ravaioli and Richard Braatz, NSF, subcontract from Northwestern University, “National Center for Learning and Teaching in Nanoscale Science and Engineering.”

Eric Jakobsson, Narayana Aluru, H. Bailey, J. Brinker, G. Klimeck, M. Lundstrom, Umberto Ravaioli, S. Rempe, B. Roux, M. Saraniti and L. Scott, “National Center for Design of Biomimetic Nanoconductors.”

John Rogers, LDRD Sandia National Laboratory, “Soft Optoelectronic Systems.”

Klaus Schulten, Laxmikant Kale, and Robert Skeel, NSF-NRAC, “Simulations of Supramolecular Biological Systems.”

Scott White, Jeff Moore and Nancy Sottos, Northrop Grumman, “Development of Self-Healing Polymers.”

Scott White and Nancy Sottos, NASA Langley, “Durability of Z-Pin Reinforced Composites with Self-Healing Matrices.”

Gregory Timp, Narayana Aluru, Paul Bohn, P. Ferreira, Paul Kenis, Jeff Moore, John Rogers, Mark Shannon, Stephen Sligar, Jonathan Sweedler, NSF Center, Nano-CEMMS.

Selected Publications

Aksimentiev, A., Heng, J.B., Timp, G., and Schulten, K. (2004), “Microscopic kinetics of DNA translocation through synthetic nanopores,” Biophysical Journal, 87, pp. 2086–2097.

Amaro, R. and Luthey-Schulten, Z. (2005, in press), “Molecular dynamics simulations of substrate channeling through an alpha-beta protein”, Journal of Chemical Physics.

Autenrieth, F., Tajkhorshid, E., Baudry, J., and Luthey-Schulten, Z. (2004), “Classical Force Field Parameters for the Heme Prosthetic Group of Cytochrome c,” Journal of Computational Chemistry, 25, pp. 1613-1622.

Balaeff, A., Koudella, C.R., Mahadevan, L., and Schulten, K. (2004), “Modeling DNA loops using continuum and statistical mechanics,” Philosophical Transactions of the Royal Society A, 362, pp. 1355–1371.

Bayas, M.V., Schulten, K., and Leckband, D. (2004), “Forced dissociation of the strand dimer interface between C-cadherin ectodomains,” Mechanics and Chemistry of Biosystems, 1, pp.101–111.

Bevan, M.A., Lewis, J.A., Braun, P.V., and Wiltzius, P. (2004), “Structural Evolution of Colloidal Crystals with Increasing Ionic Strength,” Langmuir, 20, pp. 7045-7053.

Braun, R., Engelman, D.M. and Schulten, K. (2004), “Molecular dynamics simulations of micelle formation around dimeric glycophorin A transmembrane helices,” Biophysical Journal, 87, pp.754–763.

Brown, E.N., White, S.R., and Sottos, N.R. (2004), “Fatigue crack arrest in a self-healing polymer composite,” Proceedings of SEM X International Congress on Experimental and Applied Mechanics, Society for Experimental Mechanics, Costa Mesa, CA.

Brown, E.N., White, S.R., and Sottos, N.R. (2004), “Fatigue Crack Propagation in Microcapsule Toughened Epoxy,” Journal of Materials Science, 39, pp. 1703-1710.

Brown, E.N., White, S.R., and Sottos, N.R. (2004), “Microcapsule induced toughening in a self-Healing polymer composite,” Journal of Materials Science, 39, pp. 1703-1710.

Cannon, Jr., D.M., Flachsbart, B.R., Shannon, M.A., Sweedler, J.V. and Bohn, P.W. (2004), “Fabrication of Single Nanofluidic Channels in Poly(methylmethacrylate) Films via Focused-ion Beam Milling for use as Molecular Gates,” Applied Physics Letters, 85, pp. 1241-1243.

Carney, P.S., Frazin, R.A., Bozhevolnyi, S.I., Volkov, V.S., Boltasseva, A., and Schotland, J.C., (2004), "A computational lens for the near-field," Physical Review Letters, 92 p. 163903.

Chang, I.-H., Tulock, J.J., Liu, J., Kim, W.-S., Cannon, D.M., Jr., Lu, Y., Bohn, P.W., Sweedler, J.V., and Cropek, D.M. (2005), “Miniaturized Lead Sensor Based on a Lead Specific Catalytic DNAzyme in a Nanocapillary Interconnected Microfluidic Device,” Environmental Science Technology, 39, pp. 3756-3761.

Chatterjee, A.N., Cannon, D.M., Jr., Gatimu, E.N., Sweedler, J.V., Aluru, N.R., and Bohn, P.W. (2005, in press), “Modeling and Simulation of Ionic Currents in Three-Dimensional Microfluidic Devices with Nanofluidic Interconnects,” Journal of Nanopartical Research.

Chattopadhyay, S. and Bohn, P.W. (2004), “Direct-Write Patterning of Microstructured Porous Silicon Arrays by Focused Ion Beam Pt Deposition and Metal-Assisted Electroless Etching,” Journal of Applied Physics, 96, pp. 6888-6894.

Choban, E.R., Markoski, L.J., Wieckowski, A., and Kenis, P.J.A. (2004),“Micro-Fluidic Fuel Cell Based on Laminar Flow,” Journal of Power Sources, 128, pp. 54-60.

Cohen, J., Kim, K., Posewitz, M., Ghirardi, M.L., Schulten, K., Seibert, M., and King, P. (2005), “Molecular dynamics and experimental investigation of H2 and O2 diffusion in [Fe]-hydrogenase,” Biochemical Society Transactions, 33, pp. 80–82.

Craig, D., Gao, M., Schulten, K., and Vogel, V. (2004), “Structural insights into how the MIDAS ion stabilizes integrin binding to an RGD peptide under force,” Structure, 12, pp. 2049–2058.

Dittrich, M., Hayashi, S., and Schulten, K. (2004), “ATP hydrolysis in the \betaTP and \betaDP catalytic sites of F1-ATPase,” Biophysical Journal, 87, pp. 2954–2967.

Fettig, J., Sobh, N., Melnikov, D., and Leburton, J.P., (2005), “High Performance Algorithms for Scalable Spin Qubit Circuits with Quantum Dots,” Proceedings of the 6th LCI International Conference on Linux Cluster: the HPC revolution 2005, Chapel Hill, North Carolina.

Frazin, R.A., Fischer, D.G., and Carney, P.S. (2004),"Information content of the near-field: two-dimensional samples," Journal of the Optical Society of America, A 21, pp. 1050-1057.

Geubelle, P. (2005), “Solution for Visual Stability Across Saccades,” Behavioral and Brain Sciences, 17, pp. 265-266.

Ghirardi, M.L., King, P.W., Posewitz, M.C., Maness, P.C., Fedorov, A., Kim, K., Cohen, J., Schulten, K., and Seibert, M. (2005), “Approaches to developing biological H2-photoproducing organisms and processes,” Biochemical Society Transactions, 33, pp.70–72.

Gracheva, M., Xiong,, A., Leburton, J.P., Aksimentiev, A., Schulten, K., and Timp, G. (2005), “Self-Consistent Simulation of DNA translocation through an artificial nanopore”, IEEE-NDSI'05 Conference Digest, Houston, p.51.

Gunawan, R., Choban, E.R., Conour, J., Silvestre, J., Gaskins, H.R., Schook, L.B., Kenis, P.J.A., and Leckband, D.E. (2005), “Regiospecific Control of Gene Expression in Cells Cultured on Two-component Counter Gradients of Extracellular Matrix Proteins,” Langmuir, 21, pp. 3061-3068.

Hauck, A.L., Swanson, K.S., Kenis, P.J.A., Leckband, D.E., Gaskins, H.R., and Schook, L.B. (2005, review), “Twists and Turns in the Development and Maintenance of Mammalian Small Intestine Epithelium,” Birth Defects Research (Part C), 75, pp. 58-71.

Hayashi, S., Tajkhorshid, E., Kandori, H., and Schulten, K. (2004), “Role of hydrogen-bond network in energy storage of bacteriorhodopsin’s light-driven proton pump revealed by ab initio normal mode analysis,” Journal of the American Chemical Society, 126, pp. 10516–10517.

Hendrickx, J., Geubelle, P.H. and Sottos, N.R. (2005), “A spectral scheme to simulate the mode III dynamic delamination of thin films,” Engineering Fracture Mechanics, 72/12, pp. 1866-1891.

Heng, J.B., Ho, C., Kim, T., Timp, R., Aksimentiev, A., Grinkova, Y.V., Sligar, S., Schulten, K., and Timp, G. (2004), “Sizing DNA using a nanometer-diameter pore,” Biophysical Journal, 87, pp. 2905–2911.

Hess, K. and Philipp,W. (2004), “Breakdown of Bell’s theorem for certain objective local parameter spaces,” Proceedings of the National Academy of Sciences, USA, 101/7, pp. 1799-1805.

Hess, K. and Philipp,W. (2004), “Bell’s theorem: Critique of proofs with and without inequalities,” American Institute of Physics Conference Proceedings, vol. 750, Foundations of Probability and Physics-3, Vaxjo Sweden, pp.150-157.

Jayashree, R.S., Spendelow, J. S., Yeom, J., Rastogi, C., Shannon, M.A., Kenis, P.J.A. (2005, in press), “Electrooxidation of Formic Acid on Electrodeposited Pt and Pt/Pd Catalyst Structures,” Electrochimica Acta.

Jeon, S., Park, J.-U., Cirelli, R., Yang, S., Heitzman, C.E., Braun, P.V., Kenis, P.J.A. and Rogers, J.A. (2004), “Fabricating Complex Three-dimensional Nanostructures with High-Resolution Conformable Phase Masks,” Proceedings of the National Academy of Sciences, USA, 101, pp. 12428-12433.

Kale, L.V., Kumar, S., DeSouza, J., Potnuru, M., and Bandhakavi, S. (2004, in press), “Faucets: Efficient Resource Allocation on the Computational Grid,” Proceedings of the International Conference on Parallel Processing, Montreal, Canada.

Kosztin, I. and Schulten, K. (2004), “Fluctuation-driven molecular transport through an asymmetric membrane channel,” Physical Review Letters, 93, p. 238102.

Kuo, T.-C., Kim, H.-K., Cannon, Jr., D.M., Shannon, M.A., Sweedler, J.V., and Bohn, P.W. (2004), “Nanocapillary Array Membranes Effect Rapid Mixing and Reaction,” Angewandte Chemie International Edition English, 43, pp. 1862-1865.

Larios, E., Li, J.S., Schulten, K., Kihara, H., and Gruebele, M. (2004), “Multiple probes reveal a native-like intermediate during the low-temperature refolding of Ubiquitin,” Journal of Molecular Biology, 340, pp. 115–125.

Larios, E., Yang, W.Y., Schulten, K., and Gruebele, M. (2004), “A similarity measure for partially folded proteins: application to unfolded and native-like conformational fluctuations,” Journal of Chemical Physics, 307, pp. 217–225.

Lee, W., Chan, A., Bevan, M.A., Lewis, J.A., and Braun, P.V. (2004), “Nanoparticle-mediated epitaxial assembly of colloidal crystals on patterned substrates,” Langmuir, 20, pp. 5262-5270.

Li, Y., Lu, D., Rotkin, S., Schulten, K., and Ravaioli, U. (2004), “Electronic Structure and Dielectric Behavior of Finite-Length Single-Walled Carbon Nanotubes,” Proceedings of IEEE Nano 2004, pp. 273-275.

Li, Y., Lu, D., Rotkin, S.V., Schulten, K., and Ravaioli, U. (2004), “Electronic structure and dielectric behavior of finite-length single-walled carbon nanotubes,” Proceedings of the Fourth IEEE Conference on Nanotechnology, Munich, Germany.

Li, Y., Lu, D., Rotkin, S. V., Schulten, K., and Ravaioli, U. (2005, in press), “Screening of water dipoles inside finite-length armchair carbon nanotubes,” Journal of Computational Electronics.

Li,Y., Lu, D., Rotkin, S.V., Schulten, K., and Ravaioli, U. (2004), "Screening of water dipoles inside finite-length armchair carbon nanotubes," 10th International Workshop on Computational Electronics, Purdue University.

Li, Y., Rotkin, S.V., and Ravaioli, U. (2004), "Metal-semiconductor transition in armchair carbon nanotubes by symmetry breaking," Applied Physics Letters, 85, pp. 4178-4180.

Liang, H., Angelini, T.E., Braun, P.V., and Wong, G.C.L. (2004), “Roles of Anionic and Cationic Template Components in Biomineralization of CdS Nanorods Using Self-Assembled DNA – Membrane Complexes," Journal of the American Chemical Society, 126, pp. 14157-14165.

Lu, D., Li, Y., Rotkin, S.V., Ravaioli, U., and Schulten, K. (2005, in press), “Empirical Nanotube Model for Biological Applications,” Journal of Physical Chemistry B.

Lu, D., Li, Y., Rotkin, S.V., Ravaioli, U., and Schulten, K. (2004), “Finite-size Effect and Wall Polarization in a Carbon Nanotube Channel,” Nano Letters, 4, pp. 2383-2387.

Lu, M., Lu, M., Carney, P.S., and Michielssen, E. (2004),"FDTD simulation of 3-D surface plasmon polariton band gap waveguide structures," IEEE Antennas and Propagation Society International Symposium 2004 Digest held in Conjunction with: USNC/URSI National Radio Science Meeting, 3, pp. 3155-3158.

Lytle, D.R. II, Carney, P.S., Schotland, J.C., and Wolf, E. (2005), "Generalized optical theorem for reflection, transmission and extinction of power for electromagnetic fields," Physical Review E, 71, p. 056610.

Maiti, S. and Geubelle, P.H. (2005), “A cohesive model for fatigue failure of polymers,” Engineering Fracture Mechanics, 72/5, pp. 691-708.

Marks, D.L., Carney, P.S., and Boppart, S.A. (2004), “Adaptive Spectral Apodization for Sidelobe Reduction in Optical Coherence Tomography Images,” Journal of Biomedical Optics, 9/6, pp. 1281-1287.

Marks, D. and Carney, P.S. (2005, in press), "Near-field diffractive elements," Optics Letters.

Martin, R. M. (2004), Electronic Structure: Basic theory and practical methods, Cambridge University Press.

McDonald, M. and Watkin, K.L. (2004), “Investigations into the Structure and Magnetic Properties of Dextran Small Particulate Gadolinium Oxide Nanoparticles,” Proceeding of the 12th International Society for Magnetic Resonance in Medicine, p. 1718.

Oldenburg, A.L., Gunther, J.R., and Boppart, S.A. (2004, in press), “Imaging Magnetically-Labeled Cells With Magnetomotive Optical Coherence Tomography,” Optics Letters.

Oldenburg, A.L., Xu, D., Luo, W., Gunther, J., Boppart, S.A., Watkin, K.L., and Najarro, G (2004), “In vivo detection of exogenous contrast agents using optical coherence tomography,” Journal of Biomedical Optics, 17.

Pogorelov, T. and Luthey-Schulten, Z. (2004), “Variations in the fast folding rates of the lambda-repressor: a hybrid molecular dynamics study," Biophysical Journal, 87, pp. 207-214.

Ravishankar, R., Matagne, P., Leburton J.P., and Martin, R.M. (2004), "Three-dimensional self-consistent simulations of symmetric and asymmetric laterally coupled vertical quantum dots," Physical Review B, 69, p. 035326.

Rittenhouse, T.L., Hossain, T.K., Lindesay, J., Marcus, A., Bohn, P.W., and Adesida I. (2004), “Surface-state Origin for the Blueshifted Emission Anodically Etched Porous Silicon Carbide,” Journal of Applied Physics, 95, pp. 490-496.

Roux, B. and Schulten, K. (2004), “Computational studies of membrane channels,” Structure, 12, pp. 1343–1351.

Rule, J.D., Sottos, N.R., White, S.R., and J.S. Moore (2005, in press), “The chemistry of self-healing polymers,” Education in Chemistry.

Rule, J.D., Brown, E.N., Sottos, N.R., White, S.R., and Moore, J.S. (2005), “Wax-protected catalyst microspheres for efficient self-healing materials,” Advanced Materials, 17/2, pp. 205-208.

Schoonover, R., Rutherford, J.M., Keller, O., and Carney, P.S. (2005, in press), "Nonlocal constitutive relations and the quasi-homogeneous approximation," Physics Letters A.

Sener, M.K., Park, S., Lu, D., Damjanovic, A., Ritz, T., Fromme, P., and Schulten, K. (2004), “Excitation migration in trimeric cyanobacterial photosystem,” International Journal of Chemical Physics, 120, pp. 11183–11195.

Shih, A.Y., Denisov, I.G., Phillips, J.C., Sligar, S.G., and Schulten, K. (2005), “Molecular dynamics simulations of discoidal bilayers assembled from truncated human lipoproteins,” Biophysical Journal, 88, pp. 548–556.

Sotomayor, M., Corey, D.P., and Schulten, K. (2005), “In search of the hair-cell gating spring: Elasticproperties of ankyrin and cadherin repeats,” Structure, 13, pp. 669-682.

Swearingen, C.B., Wernette, D.P., Cropek, D.M., Lu, Y., Sweedler, J.V., and Bohn, P.W. (2005), “Immobilization of a Catalytic DNA Molecular Beacon on Au for Pb(II) Detection,” Analytical Chemistry, 77, pp. 442-448.

Tan, W., Sendemir-Urkmez, A., Fahrner, L.J., Jamison, R,, Leckband, D.L., and Boppart, S.A. (2004), “Structural and Functional Optical Imaging of Three-Dimensional Engineered Tissue Development,” Tissue Engineering, 10, pp. 1747-1756.

Therriault, D., Shepherd, R.F., White, S.R., and Lewis, J.A. (2005), "Fugitive inks for direct-write assembly of three-dimensional microvascular networks," Advanced Materials, 17/4, pp. 395-399.

Thompson, A.L., Gaab, K.M., Xu, J., Bardeen, C.J., and Martínez, T.J. (2004), “Variable Electronic Coupling in Phenylacetylene Dendrimers: The Role of Förster, Dexter, and Charge-Transfer Interactions,” Journal of Physical Chemistry, 108A, pp. 671-682.

Toniolo, A., Levine, B., Thompson, A., Quenneville, J., Ben-Nun, M., Owens, J., Olsen, S., Manohar, L., and Martínez, T.J (2004, in press), “Photodynamics from First Principles,” in A. Kutateladze, ed., Computational Methods in Organic Photochemistry, New York, Marcel-Dekker.

Tulock, J.J., Shannon, M.A., Bohn, P.W., and Sweedler, J.V (2004), “Microfluidic Separation and Gateable Fraction Collection for Mass-Limited Samples,” Analytical Chemistry, 76, pp. 6419-6425.

Villa, E., Balaeff, A., Mahadevan, L., and Schulten, K. (2004), “Multi-scale method for simulating protein-DNA complexes,” Multiscale Modeling and Simulation, 2, pp. 527–553.

Wang, Q., Jakubowski, J.A., Sweedler, J.V., and Bohn, P.W., (2004) “Quantitative Submonolayer Spatial Mapping of Arg-Gly-Asp-containing Peptide Organomercaptan Gradients on Gold with Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry,” Analytical Chemistry, 76, pp. 1-8.

White, S.R., Maiti, S., Jones, A.S., Brown, E.N., Sottos, N.R., and Geubelle, P.H. (2005), “Fatigue of self-healing polymers: multiscale analysis and experiments,” 11th International Congress on Fracture, Turin, Italy.

White, S.R., Sottos, N.R., Geubelle, P.H., Moore, J.S., Kessler, M.R., Sriram, S.R., Brown, E.N. and Viswanathan, S. (2001), “Autonomic healing of polymer composites,” Nature, 409, pp. 794-797.

White, S.R., Sottos, N.R., Moore, J.S., Brown, E.N., Jones, A.S., Rule, J. (2004), “Autonomic healing of polymers and composites,” 21st International Congress of Theoretical and Applied Mechanics (ICTAM), Warsaw Poland.

White, S.R., Sottos, N.R., Moore, J.S., and Geubelle, P.H., (2004), “Autonomic healing of polymer composites,” Proceedings of the American Society for Composites (ASC), 16th Annual Technical Conference, Blacksburg, VA.

White, S.R., Sottos, N.R., and Toohey, K. (2004), “Autonomic healing of polymer coatings,” Proceedings of the European Conference on Coatings, Berlin, Germany.

Yeom, J., Mozsgai, G.Z., Flachsbart, B.R., Choban, E.R., Asthana, A., Shannon, M.A., Kenis, P.J.A. (2005), “Fabrication and characterization of a silicon-based millimeter scale, microfabricated PEM fuel cell operating with hydrogen, methanol, or formic acid as fuels,” Sensors and Actuators B, 107/2, pp. 882-991.

Yu, J., Ha, T., and Schulten, K. (2004), “Conformational model of the Holliday junction transition deduced from molecular dynamics simulations,” Nucleic Acids Research, 32, pp. 6683–6695.

Zheng, G., Kakulapati, G., and Kale, L.V. (April 2004), “BigSim: A Parallel Simulator for Performance Prediction of Extremely Large Parallel Machines,” Proceedings of the 18th IEEE International Parallel & Distributed Processing Symposium (IPDPS 2004), Santa Fe, NM.

Zysk, A., Schotland, J.C., and Carney, P.S. (2005, in press), "Eikonal method for calculation of coherence functions," Physical Review Letters.